PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001044.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 1127aa    MW: 128941 Da    PI: 6.1613
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001044.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.33.8e-21518601189
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 
                                     ++Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++++etrtgC a++++++ ++++w+v+
  FANhyb_rscf00001044.1.g00001.1 518 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----NRKKETRTGCLAMIRLRLVESNRWRVD 591
                                     69****************************************99888.....8999*********************** PP

                            FAR1  80 kleleHnHel 89 
                                     +++l+HnH +
  FANhyb_rscf00001044.1.g00001.1 592 EVKLDHNHLF 601
                                     ********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd089721.56E-581168No hitNo description
PfamPF011491.1E-221165IPR012319Formamidopyrimidine-DNA glycosylase, catalytic domain
SuperFamilySSF816245.94E-20285IPR012319Formamidopyrimidine-DNA glycosylase, catalytic domain
SMARTSM008984.9E-122166IPR012319Formamidopyrimidine-DNA glycosylase, catalytic domain
PROSITE profilePS5106819.5772163IPR012319Formamidopyrimidine-DNA glycosylase, catalytic domain
Gene3DG3DSA:3.20.190.108.8E-232114No hitNo description
SuperFamilySSF816245.94E-20133177IPR012319Formamidopyrimidine-DNA glycosylase, catalytic domain
Gene3DG3DSA:3.20.190.108.8E-23149172No hitNo description
PfamPF068311.0E-29171258IPR015886DNA glycosylase/AP lyase, H2TH DNA-binding
SuperFamilySSF469469.94E-24171258IPR010979Ribosomal protein S13-like, H2TH
SMARTSM012322.1E-32171263IPR015886DNA glycosylase/AP lyase, H2TH DNA-binding
Gene3DG3DSA:1.10.8.509.7E-36173302No hitNo description
PfamPF031011.1E-18518600IPR004330FAR1 DNA binding domain
PfamPF105511.3E-29723816IPR018289MULE transposase domain
PROSITE profilePS509669.50710091045IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-510201047IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006284Biological Processbase-excision repair
GO:0006289Biological Processnucleotide-excision repair
GO:0003684Molecular Functiondamaged DNA binding
GO:0003906Molecular FunctionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016799Molecular Functionhydrolase activity, hydrolyzing N-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
MPELPEVEAA RRAIQDNCVG KKITKAIVAD DSKVIDGVSR ADFEASLLGK SIISAHRKGK  60
NMWLQLDSPP FPSFQFGMAG AVYIKGVAVT KYKRSAVKDT DEWPSKYSKV FVQLKGVLHC  120
KYIVCTKFLG YEMLHTSLIK ITVALSRLDD GLEFSFTDKR RFAKVRLLKD LGPDALLEPM  180
TVDVLFASLS KKKISIKALL LDQSFISGIG NWVADEVLYQ ARIHPEQSSA TLSKECVEAL  240
HKSIKEVIEK SVEVGADSDQ FPSNWIFHSR EKKPGNVLVD GKKINFITVG GRTSAFVPEL  300
QKLTGNQAAK AGSKRTSKRV DDVDEEASDE EVKGPAKSKK GRKPGGQAKR STVKRKSKGS  360
DEDSDNDDST DDVDHEDDDS ADEDIKNKKR KVTTNKQSKA EMTSKKKIEE GSQNSEQLLE  420
DENNDLGNDC EQLFGIEGNE PESERDDTSD QFFEIDSNDN ENDRSELNEQ LFEIQGNDHE  480
MSGNDDTVID IQNGGSQEKV YPQPVVGLEF DSYDDAYNYY NCYAKELGFA IRVKSSWTKR  540
NSKEKRGAVL CCNCEGFKTM KEANNRKKET RTGCLAMIRL RLVESNRWRV DEVKLDHNHL  600
FDHERAQNSK SHKKMDSGAK RKMEPTLDVE VRTIKLYRTP GTDIVGYGSS NSYEGESNNY  660
VDVFKRLKLK QGDARAIYKY FSRVQLTDPN FFYVYDLSDE GSLRNVFWID SRSRAAYSYF  720
GDVVAFDTTC LSNNYEIPLV AFVGVNHHGQ TILLGCGLLA DETLETYIWL FRAWLTCMSG  780
RPPQTIITTQ CKAIHSAIVE VFPRAHHRLC TSHVVQSILE NMEALQDYEA FQMILSRTVY  840
DSLKVDEFES GWEDMIQRFG IRNHEFLQSL YEDREHWGPA YSKDTCFSGM PDFQNGESTR  900
PFFDGHIHQK TSFEEFFEVY DIVLENKRQE EAHNDVESRD LNPILRTRCY YELQLSKFYT  960
KDVFRKFQHE VAMMSSCFSI TQVHTNGPIV TYMIKEREGE EILRGVRNFE VMYDKAGAEV  1020
RCMCSCFNLN GYLCRHALCI LNYNGVEEIP FQYIFSRWRK DFKRLYVPDL GSNNVDITNP  1080
VQWFDHLYRR AMQVVQEGMI SHDHYMVCWQ AFKESLNKVR LVADKQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3twl_A1e-14513191294Formamidopyrimidine-DNA glycosylase 1
3twm_A1e-14513191294Formamidopyrimidine-DNA glycosylase 1
3twm_B1e-14513191294Formamidopyrimidine-DNA glycosylase 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467066.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLM5XGN70.0M5XGN7_PRUPE; Uncharacterized protein
STRINGGLYMA15G13160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8